Here is a more pedestrian version of Fedor Petrov's argument: We set $\lambda=1/\log6$ and claim that $(-1)^n(1/\zeta)^{(n)}(\lambda n)>0$ if $n$ is big enough. With $a_k=\log k/k^\lambda$, we have
\begin{equation}
(-1)^n(1/\zeta)^{(n)}(\lambda n)
=\sum_{k\ge1}\mu(k)a_k^n\ge a_6^n-\sum_{k\ne6}a_k^n,
\end{equation}
where we used $\mu(6)=1$ and $\mu(k)\ge-1$.
One quickly checks that $0\le a_k/a_6<1$ for $k\ne 6$ (because $\log x/x^\lambda$ assumes a strict maximum in $x=6$.)
So the claim follows once we know that $\sum_{k\ne6}(a_k/a_6)^n<1$ for all $n$ big enough. Set $c=1/\zeta(2)$. For $n$ big enough, we have $(a_k/a_6)^n<c/k^2$ for all $k\ne6$, because this holds for $k=1$ (recall that $a_1=0$) and for $2\le k\ne6$ this is equivalent to
\begin{equation}
n>\frac{2\log k-\log c}{\log a_6-\log a_k}
=\frac{2\log k-\log c}{\log a_6+\lambda\log k-\log\log k}
\end{equation}
and the right hand side is bounded (it converges to $2/\log\lambda$).
We get $\sum_{k\ne6}(a_k/a_6)^n\le\sum_{k\ne6}c/k^2<c\zeta(2)=1$, and the claim follows.
Remark: With these rough inequalities, the OP's conjecture fails for all $n\ge 970$. One can tweak the proof at various places. But it seems to me that the smallest $n$ where the conjecture fails is around $n=155$.