This question continues the theme of some recent questions on implicit definability.
A relation $R$ is implicitly definable in a first-order structure $M$ if there is a property $\varphi(\dot R)$, expressible in an expansion of the language with a new relation symbol $\dot R$, such that $R$ is the only relation on $M$ for which $\langle M,R\rangle$ satisfies $\varphi(\dot R)$. That is, $R$ is implicitly definable if it has a property with respect to the other structure of $M$ that only it has.
The main original question was whether implicit definability is transitive.
Main Question 1. Is the implicitly-definable-over relation transitive? That is, if $R$ is implicitly definable over $M$ and $S$ is implicitly definable over the expansion $\langle M,R\rangle$, is $S$ implicitly definable over $M$?
I had expected not, and asked Is multiplication implicitly definable from successor? with the idea that addition is easily seen as implicitly definable over successor, and multiplication is easily seen as implicitly definable over addition, but I didn't see initially that multiplication would be implicitly definable over successor. This turned out, however, not to be a counterexample, because multiplication is in fact implicitly definable from successor, as shown in the answers to that question.
The accepted answer to that question shows that we shall not violate transitivity with an example in which $R$ is definable from $S$ over $M$.
With that insight, Geoffrey Irving asked Is the set of primes implicitly definable from successor? which proposes that the set of primes might be a counterexample, since multiplication is implicitly definable over successor, and primality is explicitly definable over multiplication, but it would seem that primality is not implicitly definable from successor.
In my view, that example is probably correct but also I expect extremely difficult to prove, since we have so few tools for proving instances where a relation is not implicitly definable.
In the interest of finding elementary examples of intransitivity, therefore, let me ask explicitly here.
Main Question 2. What are some elementary examples of intransitivity in the implicitly-definable-over relation?
We want an elementary instance of a structure $M$ with an implicitly definable relation $R$, such that another relation $S$ is implicitly definable over $\langle M,R\rangle$, but $S$ is not implicitly definable over $M$.
Noah Schweber proposed an example in the comments of my previous question, namely, that the standard truth predicate is implicitly definable over the standard model of arithmetic and from that truth predicate we can define a definably-generic Cohen real, but the generic real cannot be implicitly definable on the grounds of homogeneity of the forcing. I am hoping that he will post an answer here providing fuller details.
Currently that is our only example of intransitivity, and I am hoping we can find a truly elementary instance. Please post with any instance of intransivity.