Suppose that $(H,X)$ is a finite faithful doubly transitive permutation group (where $H$ acts on the set $X$). Moreover, suppose that $H$ also acts doubly transitively (and faithfully) on a set $Y$, in such a way that the actions are not equivalent.
The list of such groups and their permutation representations is known (by using the classification of finite simple groups). One of them is $\mathsf{PSL}(d,q)$, with $d > 2$ and $q$ a prime power; we can identify $X$ with the point set of a projective space $\mathsf{PG}(d - 1,q)$, and $Y$ with the hyperplane set of that same space.
In this specific example, a subgroup $H_x \leq H$ with $x \in X$ and where $H_x$ is the stabilizer of $x$ in $H$, does not act transitively on the set $Y$.
My question: do the other examples of the permutation groups mentioned above also have this property, and if so, how is this proved ?