Consider the square $\Omega = (0,\pi) \times (0,\pi/2) \ni (r,\theta)$ endowed with the Riemannian metric \begin{equation} f^2 \big(\mathrm{d} r^2 + \sin^2(r) \, \mathrm{d} \theta^2 \big), \end{equation} where \begin{equation} f = (\sin r)^4 (\sin 2 \theta)^2. \end{equation} This arises when quotienting the unit sphere $S^6 \subset \mathbf{R}^7 = \mathbf{R}^6 \times \mathbf{R}$ by the group action of $SO(3) \times SO(3)$, with $f$ being to the volume of the fibre lying above $(r,\theta)$.
Let $\gamma$ be a geodesic segment with $\gamma(0) \in \partial \Omega$. Can $\gamma$ admit a bounded, normal Jacobi field $J$ with $J(s) \not \to 0$ as $s \to 0$?
I am confused about this point because of the following two observations.
Hsiang [Hsi83] explains that the geodesic equation is uniquely solvable for every point $(r,\pi/2) \in \partial \Omega$ with $0 < r < \pi$, and the geodesic $\gamma_r$ is orthogonal to the boundary at $\gamma_r(0) = (r,\pi/2)$. Fix some $r_0$, and let $\gamma := \gamma_{r_0}$. Varying $r$ yields a one-parameter family of geodesics, which induces the normal Jacobi field $J = \frac{\partial \gamma_r} {\partial r} $ on $\gamma$ with $J(0) = 1, J'(0) = 0$.
However, the Jacobi equation along $\gamma$ is $J'' + K_g J = 0$. Because $K \to +\infty$ near the boundary, the only bounded solutions should have $J(s) \to 0$ as $s \to 0$.
Wu-Yi Hsiang. Minimal cones and the spherical Bernstein problem. Annals of Mathematics, Vol. 118 (1983), pp. 61-73.