I see in this paper, page 46, the second sentence of 4.1, that every smooth variety over a characteristic $0$ field can be embedded into a proper smooth variety with normal crossing boundary, and the reason is Hironaka's resolution of singularity and Nagata's paper (which says every variety embedds in to a proper variety as an open set).
But I can't see how (maybe I have left something), since Hironaka's paper only shows there's a birational morphism with a proper smooth variety, but has nothing to do with embedding and information about the boundary, and I don't know how to combine the results of these two papers..
Any idea or better references are welcome.