Update. Most of my questions have been answered in the comments. I am adding these answers to the post.
There are at least three definitions of Feller semigroup and the corresponding processes: $C_0 \to C_0$ (Dynkin-Feller), $C_b \to C_b$ ($C_b$-Feller) and $B \to C_b$ (strong Feller). Most of the sources I found treat the first class, which led me to wondering:
Question 1. What are exactly the properties that work for $C_0$-Feller processes, but don't for $C_b$ and why? Do I understand it right that both are strong Markov, but $C_b$-Feller may not be càdlàg?
Answer to Q1: $C_b$-Feller processes are still càdlàg, but in the Stone-Čech compactification of the state space
Question 2. What are some common examples of not $C_b$-Feller processes, which nonetheless have nice properties?
Answer to Q2: SPDE solutions are such examples, see the comment below
Question 3. It seems that if $X_x ( t )$ is $C_0$-Feller, than it has to go to infinity as $x \to \infty$, because $\mathbb{E} f ( X_x ( t ) ) \to 0$ to ensure $P_t f \in C_0$. Does this mean that Ito diffusions which are bounded with respect to initial data $X_x ( 0 ) = x$ are $C_b$-Feller but not Feller-Dynkin?
Answer to Q2 and Q3: The semigroup $P^t$ of a (deterministic) process solving $\dot{x} = -x^3$ is $C_b$-Feller, but not $C_0$-Feller. Namely, $$ (P^t f) ( x ) = f \left( \frac{1}{\sqrt{2 t +x^{-2}}} \right), $$ maps $C_b \to C_b$, but not $C_0 \to C_0$. So does the semigroup of $dx = -x^3 dt + dw$.
Question 4. There is a standard result that $C_0$-Feller property is equivalent to the following two: $X_x ( t ) \xrightarrow[]{d} X_y ( x )$ as $x \to y$ and $X_x ( t) \xrightarrow[]{\mathbb{P}} x$ as $t \to 0$ (see Lemma 17.3 in Kallenberg's Foundations or Lemmata 185 and 186 in Almost none of the Theory of Stochastic Processes, see here). Is there an analogue for $C_b$-Feller processes?
Answer to Q4: This property is equivalent to $C_b = C_0$-Feller when the state space is compact and implies $C_b$-Feller if it is not. There is a mistake in Almost None of the Theory of Stochastic Processes: the result these properties do not imply $C_0$-Feller property.
With updated understanding of the matter, here are two new questions related to Q1:
Question Q1'. Is there a way to at least ensure that $X_t$ lives in $[-\infty, \infty]$ and not the Stone-Čech compactification of $\mathbb{R}$?
Question Q1''. Where can I read about path regularity for $C_b$-Feller processes?