Suppose $X$ is a Hausdorff (I'm happy to also assume "non compact") topological space that can be written as the topological direct limit
$$\varinjlim_{a\in J} K_a$$ for $J$ a directed set and $K_a$ compact Hausdorff subspaces of $X$, where all bonding maps are continuous non-surjective immersions (I'm happy to assume, additionally, that they are not surjective).
Suppose that there is another system of compact Hausdorff subspaces of $X$ with bonding maps as in the previous system,
$$\{H_a, a\in J'\}$$ for a directed set $J'$ with $J\subseteq J'$. Suppose that for every $a\in J$ we have
$$K_a\subseteq H_a.$$
Suppose that we still have
$$X = \varinjlim_{a\in J'}H_a$$ with the direct limit topology on the right side and $X$'s own topology on the left side.
Q1. Can we conclude that for every $a\in J'$ there exists a $b\in J$ such that $H_a\subseteq K_b$?
Q2. Can we conclude as in Q1 if in addition all the $K_a$'s and $H_a$'s are compact differentiable manifolds with differentiable immersions as bonding maps?
The answer by KP Hart answers Q1 in the negative.