Given $N$ pairs of distinct real numbers $t_i, t'_i \in [0,1]$, $i = 1,\ldots,N$, we ask if there is a function $f(x) = \cos(2\pi mx+\alpha) + \gamma\cdot \cos(2\pi nx+\beta)$, with $m, n \in \mathbb{N}$, $\alpha, \beta, \gamma \in \mathbb{R}$, so that for all $i$: $f(t_i) > f(t'_i)$?
If yes, this proves that all knots are Fourier-(1,1,2) knots, that is, possess a parametrization with Fourier series of length 1,1,2 in coordinates $x,y,z$.
Because: a) the parametrization in the x-y plane is rich enough to generate all knots (see Lamm, 1998) and b) by interchanging $t_i$ and $t'_i$ every crossing pattern can be achieved.
As references see the articles
http://arxiv.org/abs/q-alg/9711013 (Kauffman, 'Fourier knots', 1997)
http://arxiv.org/abs/1210.4543 (Lamm, 'Fourier knots', 1998)
http://arxiv.org/abs/0707.4210 (Boocher et. al, 'Sampling Lissajous and Fourier knots', 2007)
http://arxiv.org/abs/0708.3590 (Hoste, 'Torus knots are Fourier-(1,1,2) knots', 2007)
If the answer is no, we ask more generally if functions with a bounded number of cosine terms suffice (e.g. with bound 3).
We remark that Fourier-(1,1,1) knots are Lissajous knots. These are too symmetric to yield all knots (see also Tying knots with reflecting lightrays).
Edit1 (12Feb14). We give an example with 4 pairs of distinct numbers for which a single cosine function $\cos(2\pi mx+\alpha)$ does not suffice:
Choose $t_1, t'_1$ and $t_2, t'_2$ arbitrarily (but distinct) in $[0,1]$.
Let $t_3 = t_1 + 0.5$, $t'_3 = t'_1 + 0.5$ and $t_4 = t'_2 + 0.5$, $t'_4 = t_2 + 0.5$ (note the interchanged ' in $t_2$).
We then have:
if $f(t_1) > f(t'_1)$ then for odd $m$: $f(t_3) < f(t'_3)$ and for even $m$: $f(t_4) < f(t'_4)$.
This shows how the symmetries $\cos(x+2\pi) = \cos(x)$ and $\cos(x+\pi) = -\cos(x)$ prevent a solution in a Fourier series of length 1. The same argument applies for a series of length two (or more) if the frequencies are all odd or all even.
Edit2 (09July15).
The article
http://arxiv.org/abs/1507.00880 (Marc Soret, Marina Ville)
solves the Fourier-(1,1,2) knot problem using Kronecker's theorem!