I show here: (1) if $c_1=1$ and $\sigma$ is not the identity then $\sigma$ has no fixed points whose lowest-degree nonconstant term has degree coprime to $3$; and (2) if $\sigma$ has finite order under composition, then $\sigma$ has fixed points outside $\mathbf{F}_3$.
To prove (1), let $t\in\mathbf{F}_3[[T]]$ be fixed by $\sigma$, and assume that the lowest degree of any nonconstant term of $t$ is some integer $n$ which is coprime to $3$. By definition, $\sigma(t)=t(T+f(T))$, where $f(T)\in\mathbf{F}_3[[T]]$ and the lowest degree of any term of $f(T)$ is some integer $m>1$. By replacing $t$ by $t-t(0)$, we may assume that $t(0)=0$; this does not affect the other hypotheses on $t$. Joe Silverman's argument handles the case $n=1$: there is some $s\in\mathbf{F}_3[[T]]$ such that $s(t)=T$, so if
$t=\sigma(t)=t(T+f(T))$ then by applying $s$ to both sides we obtain the contradiction $T=T+f(T)$. If $n>1$ then use Taylor expansion to compute
$$
\sigma(t)=t(T+f(T))=t+f(T)t'+\sum_{i=2}^{\infty} f(T)^i H^{(i)}(t),
$$
where $H^{(i)}(t)$ is the $i$-th Hasse derivative of $t$, defined by $H^{(i)}(\sum c_k T^k)=\sum c_k\binom{k}{i}T^{k-i}$. But each term in the summation has degree at least $mi+n-i$, which is at least $m+n$ since $m\ge 2$. Since the lowest-degree term of $f(T)t'$ has degree $m+n-1$, it follows that $\sigma(t)-t$ has a term of degree $m+n-1$ and hence $\sigma(t)\ne t$.
Item (2) was mostly shown in a (since-deleted) answer by user René, who observed that if $\sigma$ has finite order (say $n$), then it fixes every symmetric polynomial in $T, \sigma(T), \sigma^2(T), \dots, \sigma^{n-1}(T)$. This proves (2) because the values of these symmetric polynomials can't all be in $\mathbf{F}_3$; this can be shown in various ways, for instance Yves Cornulier notes that the product of the $\sigma^i(T)$'s has a degree-$n$ term.
Finally, I note that there has been a good deal of work studying power series in $\mathcal{N}:=X+X^2\mathbf{F}_p[[X]]$ which have finite order under composition. It isn't hard to show that any such element has order $p^r$ for some $r$. Klopsch explicitly determined the elements of order $p$, up to conjugacy by an element of $\mathcal{N}$: they are $X(1-inX^n)^{-1/n}$ where $i\in\mathbf{F}_p^*$ and $n$ is a positive integer coprime to $p$. The conjugacy classes of elements of order $p^r$ were described in terms of Artin-Schreier-Witt theory in Jean's thesis. Alternate proofs and further developments are in Lubin's paper cited below. Still, the problem of explicitly describing an element of order $p^r$ remains open in all cases except $r\le 1$ and $p=r=2$. In case $p=r=2$ the element was constructed by Chinburg and Symonds; subsequently, together with Bleher and Poonen, they showed that their approach could not be generalized to other cases. References are below.
Benjamin Klopsch, Automorphisms of the Nottingham group, Journal of Algebra 223 (2000), 37-56
Sandrine Jean, Conjugacy classes of series in positive characteristic and Witt vectors, Journal de Théorie des Nombres Bordeaux 21 (2009), 263-284
Jonathan Lubin, Torsion in the Nottingham group, Bulletin of the London Mathematical Society 43 (2011), 547-560.
Ted Chinburg and Peter Symonds, An element of order 4 in the Nottingham group at the prime 2, arXiv:1009.5135.
Frauke Bleher, Ted Chinburg, Bjorn Poonen and Peter Symonds, Automorphisms of Katz-Gabber covers, preprint available online.