I think the answer is yes. I will assume that $p,q,r$ are all distinct. (We could have $p=r=2$ but then we get $P=R$ and $G=QR$ so the answer is still yes.) So $PQ$ is a normal odd order subgroup of index $2$ in $G$.
Proof by induction on $|G|$. Base cases when $P=1$ or $Q=1$ are easy so assume they are both nontrivial. If there is a nontrivial normal $q$-subgroup $N$ of $G$, then the result follows by applying the inductive hypothesis to $G/N$.
If not then we must have $O_p(G)\ne 1$. Then $C_G(O_p(G))$ is normal in $G$ and contains $R$, so $R^G \le C_G(O_p(G))$, and we may assume that $G=C_G(O_p(G))$.
But then $G/O_p(G)$ either has order $2$ and the result follows, or it has a nontrivial minimal normal subgroup $q$-subgroup $N/O_p(G)$, and a Sylow $q$-subgroup of $N$ is normal in $G$ and we are back to the first case.
\DeclareMathOperator
in math mode when appropriate rather than leaving math mode, e.g., for $\DeclareMathOperator\Syl{Syl}P \in \Syl_p(G)$$\DeclareMathOperator\Syl{Syl}P \in \Syl_p(G)$
vs. $P \in$ Syl$_p(G)$$P \in$ Syl$_p(G)$
. The latter has unpleasant side effects, e.g., the fonts don't match, and it allows a line break betweenSyl
and the subscript. (The\DeclareMathOperator
need be done only once, and can then be used throughout the post.) I have edited accordingly. $\endgroup$