Denote (still) $n\times n$ permutation matrices by $\mathfrak{S}_n$. The ordinary transpose preserves this group.
Given $P\in\mathfrak{S}_n$, construct the $n\times n$ matrix ${}^tP$ according to the rules:
(1) leave the 4 rims unchanged (1st row, 1st column, last row, last column);
(2) transpose its $(n-2)\times(n-2)$-submatrix found by removing the 4 rims.
Example. $$A=\begin{pmatrix} 1&0&0&0\\0&0&0&1\\0&1&0&0\\0&0&1&0 \end{pmatrix} \rightarrow {}^tA=\begin{pmatrix} 1&0&0&0\\0&0&1&1\\0&0&0&0\\0&0&1&0 \end{pmatrix}.$$ Example. $$B=\begin{pmatrix} 1&0&0&0\\0&0&0&1\\0&0&1&0\\0&1&0&0 \end{pmatrix} \rightarrow {}^tB=\begin{pmatrix} 1&0&0&0\\0&0&0&1\\0&0&1&0\\0&1&0&0 \end{pmatrix}.$$ Notice that ${}^tB$ is a permutation while ${}^tA$ is not!
Question. What is $\#\{^{t}P\in\mathfrak{S}_n:\,\,P\in\mathfrak{S}_n\}$?
Remark. This is a modest case we consider which can easily be generalized to the question of transposing several submatrices.