There are no such pairs.
Let $\lambda_1$, $\lambda_2$, $\lambda_3$ be the eigenvalues of $A$, and $\mu_1,\mu_2,\mu_3$ be those of $B$ (with $\lambda_1,\mu_1\in\mathbb R$). Since the eigenvalues are distinct, $A$ and $B$ are diagonalizable; since they commute, they are simultaneously diagonalizable, i.e., an eigenbasis for $A$ is also that for $B$. We assume that in a common eigenbasis, $\lambda_i$ corresponds to $\mu_i$ (clearly, $\lambda_1$ corresponds to $\mu_1$ --- because only these eigenvectors may be chosen real).
Now let $e_2$ be an eigenvector for $A$ corresponding to $\lambda_2$. The linear system defining it has coefficients in $K=\mathbb Q[\lambda_2]$, so we may assume that the elements of $e_2$ are also in $K$. Writing down the condition that $e_2$ is an eigenvector of $B$ (with eigenvalue $\mu_2$) we get that $\mu_2\in K$. Thus $\mathbb Q[\mu_2]=K=\mathbb Q[\lambda_2]$. Moreover, $\lambda_2$ and $\mu_2$ belong to the units group of $K$ --- which, as is known, is cyclic.
Thus $\lambda_2^k=\mu_2^\ell$ for some $k$ and $\ell$, which yields also $\lambda_i^k=\mu_i^\ell$, and hence $A^k=B^\ell$. Thus the subgroup generated by $A$ and $B$ is cyclic.