In model theory, two structures $\mathfrak{A}, \mathfrak{B}$ of identical signature $\Sigma$ are said to be elementarily equivalent ($\mathfrak{A} \equiv \mathfrak{B}$) if they satisfy exactly the same first-order sentences w.r.t. $\Sigma$. An astounding theorem giving an algebraic characterisation of this notion is the so-called Keisler-Shelah isomorphism theorem, proved originally by Keisler (assuming GCH) and then by Shelah (avoiding GCH), which we state in its modern strengthening (saying that only a single ultrafilter is needed):
$\mathfrak{A} \equiv \mathfrak{B} \ \iff \ \exists \mathcal{U} \text{ s.t. } (\Pi_{i\in\mathcal{I}} \ \mathfrak{A})/\mathcal{U} \cong (\Pi_{i\in\mathcal{I}} \ \mathfrak{B})/\mathcal{U},$
where $\mathcal{U}$ is a non-principal ultrafilter on, say, $\mathcal{I} = \mathbb{N}$. That is, two structures are elementarily equivalent iff they have isomorphic ultrapowers.
My question is the following (admittedly rather vague): Does anyone know of constructions in which an ultrafilter is chosen by an appeal to this characterisation and then used for other means? An example of what I have in mind would be something like this (using the fact that any two real closed fields are elementarily equivalent w.r.t. the language of ordered rings): In order to perform some construction $C$ I ``choose'' a non-principal ultrafilter $\mathcal{U}$ on $\mathbb{N}$ by specifying it as a witness to the following isomorphism induced by Keisler-Shelah:
$\mathbb{R}^\mathbb{N}/\mathcal{U} \cong \mathbb{R}_{alg}^\mathbb{N}/\mathcal{U},$
where $\mathbb{R}_{alg}$ is the field of real algebraic numbers. So the construction $C$ should be dependent upon the fact that $\mathcal{U}$ is a non-principal ultrafilter bearing witness to the Keisler-Shelah isomorphism between some ultrapower of the reals and the algebraic reals, resp.
Also, a follow-up question: Let's say I'd like to ``solve'' the above isomorphism for $\mathcal{U}$. Are there interesting things in general known about the solution space, e.g., the set of all non-principal ultrafilters bearing witness to the Keisler-Shelah isomorphism for two fixed elementarily equivalent structures such as $\mathbb{R}$ and $\mathbb{R}_{alg}$? What machinery is useful in investigating this?