As is well known, there is classification of line bundles on the moduli stack of elliptic curves over a nearly arbitrary base scheme in the paper The Picard group of $M_{1,1}$ by Fulton and Olsson: every line bundle is isomorphic to a tensor power of the line bundle of differentials $\omega$ and $\omega^{12}$ is trivial.
I am now interested in a similar classification scheme for higher dimensional vector bundles (i.e. etale-locally free quasi-coherent sheaves of finite rank). I am especially interested in the prime 3, so you may assume, 2 is inverted, or even that we work over $\mathbb{Z}_{(3)}$. I found really very little in the literature on these questions. I know only of two strategies to approach the topic:
1) I think, I can prove that every vector bundle $E$ on the moduli stack over $\mathbb{Z}$ localized at $p$ for $p>2$ is an extension of the form $0\to L \to E \to F$ where $L$ is a line bundle and $F$ a vector bundle of one dimension smaller than $E$ (this may hold also for $p=2$, but I haven't checked). In a paper of Tilman Bauer (Computation of the homotopy of the spectrum tmf) Ext groups of the so called Weierstraß Hopf algebroid are computed, which should amount to a computation of the Ext groups of the line bundles on the moduli stack of elliptic curves if one inverts $\Delta$. It follows than that every vector bundle on the moduli stack of elliptic curves over $\mathbb{Z}_{(p)}$ is isomorphic to a sum of line bundles for $p>3$ if I have not made a mistake. But for $p=3$, there are many non-trivial Ext groups and I did not manage to see which of the occuring vector bundles are isomorphic.
2) One can try to find explicit examples of a non-trivial higher dimensional vector bundles. A candidate was suggested to me by M. Rapoport: for every elliptic curve $E$ over a base scheme $S$ we have an universal extension of $E$ by a vector bundle. Take the Lie algebra of this extension and we get a canonical vector bundle over $S$. As explained in the book Universal Extensions and One Dimensional Crystalline Cohomology by Mazur and Messing, this is isomorphic to the deRham cohomology of $E$. This vector bundle is an extension of $\omega$ and $\omega^{-1}$ and lies in a non-trivial Ext group. But I don't know how to show that this bundle is non-trivial.
I should add that I am more a topologist than an algebraic geometer and stand not really on firm ground in this topic. I would be thankful for any comment on the two strategies or anything else concerning a possible classification scheme.