Up to homeomorphism, there are 2 one-dimensional topological manifolds and countably many 2- and 3-dimensional compact manifolds, respectively, since each manifold in these dimensions can be triangularized and hence be described by a finite amount of combinatorial data.
In higher dimensions this argument doesn't work anymore. So it still true for $n\ge 4$ that the set of homeomorphism classes of compact, connected topological $n$-manifolds (without boundary) is countable?
(I'd be also interested in the same question for diffeomorphism classes of compact smooth manifolds.)