Let $X$ be a locally finite type algebraic stack $X$ (but feel free to pretend it's a scheme) with a presentation as the filtered colimit of finite type open substacks $U_i$. By descent, at the level of stable derived categories of $\ell$-adic sheaves we have $$D(X) = \varprojlim D(U_i).$$ Suppose I have two objects $F, G \in D(X)$ and compatible isomorphisms $\phi_i \colon F|_{U_i} \cong G|_{U_i}$ for each $i$. My hope is to glue these $\phi_i$ into a global isomorphism $\phi \colon F \cong G$. I know gluing in derived categories is notoriously tricky; using stable $(\infty-)$ categories one does have the above limit presentation but for general open covers one would in principle need to also specify coherence data; in practice this is so complicated that I have never seen it done along these lines.
However, the open cover in my situation is particularly simple; we could even assume that $U_1 \subset U_2 \subset \ldots$. It doesn't seem totally unreasonable that the $\phi_i$ are enough to glue up a global isomorphism $\phi$ in this case. Is there a way to do this rigorously, or is it a fundamentally erroneous hope?
I'm willing to make some small additional assumptions if necessary to salvage the hope; for example, in my situation of interest $F$ and $G$ will be bounded constructible.