Suppose $Y$ is a variety defined over $\mathbb{Q}$ and $pt$ is a rational point of $Y$. Let $\pi:X \rightarrow Y$ be the blow up of $Y$ at $pt$ and $D$ be the exceptional divisor. For simplicity let's assume both $X$ and $D$ are smooth. Let $CD$ be the cone of $D$ defined to be \begin{equation} D \times I/D \times \{0\} \end{equation} where $I$ is the unit interval $[0,1]$. Now let $Y'$ be \begin{equation} Y'= X \sqcup CD /D \times \{ 1\} \end{equation} then the cw complex $Y'$ is homotopic to $Y$, which the morphism $\pi$ is homotopic to the inclusion $i:X \rightarrow Y'$. Then $(CD,X)$ is a cover of $Y'$ while the intersection of $CD$ and $X$ is just $D \times \{ 1\} \simeq D$. The cover $(CD,X)$ of $Y'$ induces a Mayer-Vietoris sequence \begin{equation} \cdots \rightarrow H^n(Y',\mathbb{Q}) \xrightarrow{\pi^*} H^n(X,\mathbb{Q}) \xrightarrow{j^*}H^n(D,\mathbb{Q}) \xrightarrow{\delta}H^{n+1}(Y',\mathbb{Q}) \rightarrow \cdots \end{equation} where $j$ is the inclusion morphism $D \rightarrow X$.
The morphism $\pi^*$ and $i^*$ is acutually motivic since they are induced by morphisms in the category of $\mathbb{Q}$-varieties. Is the morphism $\delta$ in this long exact sequence motivic?