To make the question more precise:
We call a topological space $(X,\tau)$ zero-dimensional if for $x\neq y \in X$ there is a clopen set $U\subseteq X$ with $x\in U, y\notin U$.
Let $\mathcal{C}$ be a collection of compact and zero-dimensional topologies on $\mathbb{N}$ such that for $\tau_1 \neq \tau_2 \in \mathcal{C}$ there is no homeomorphism $\varphi: (\mathbb{N},\tau_1) \to (\mathbb{N},\tau_2)$.
Question: What is the maximal cardinality that $\mathcal{C}$ can have?