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In this generality it is certainly false. Let $C$ be the coaugmented counital coalgebra over $\mathbb{Q}$ cogenerated by a single primitive cogenerator in (homological) degree $3$. Then $\pi_{\ast} (Comod_C(\mathbb{Q})) = \mathbb{Q}[x]$ with $|x| = 2$ so $\mathbb{Q}$ can't be compact because then $\mathbb{Q}[x^{-1}] = 0$ contradicting that $\pi_{\ast} (End_C(\mathbb{Q}))[x^{-1}] = \mathbb{Q}[x,x^{-1}] \ne 0$
To add to what Achim said, with our current technology (by which I mean HTT) there is no way to define the $\infty$ category of $\infty$ categories directly as a quasi-category (as far as I'm aware). Instead it is defined as a homotopy coherent nerve of a simplicial category (e.g. fibrant marked simplicial sets). So in HTT a functor into $Cat_{\infty}$ is encoded as a simplicially enriched functor. This forces us to leave the world of quasi-categories. To remedy this S/U allows us to talk about functors without leaving the world of quasi-categories by working with the unstraightned objects.
I believe this is a really standard example which is probably known to many but I only realized now. Probably you were already aware in which case I apologize for the cluttering this comment section
I think I have an example for failure when $\kappa = \omega$. If we take $C = \otimes^{\infty}_{k=0} E\{x_k\}$ a countable tensor product of simple coalgebras cogenerated by a single primitive element (over $\mathbb{F}_2$). Then in the $\infty$-category of $C$-comodules (in $\mathbb{F}_2$-complexes) there are no non-trivial compact objects. Essentially because for any compact comodule there's an non-nilpotent element in the Ext of the identity functor which acts on it's underlying complex by 0.
Oh you're right! I realized I was quoting the wrong thing. A page before there's exercise 2.j: "Prove that if $F_1, F_2: \mathcal{K} \to \mathcal{L}$ are $\lambda$-accessible functors between locally $\lambda$-presentable categories and $F_2$ preserves limits, then the inserter category $Ins(F_1, F_2)$ is locally $\lambda$-presentable." but as you say the category of $S$-coalgebras is $Ins(Id,S)$ and that's the wrong direction. The next exercise is the same only instead of $F_2$ preserving limits they require $F_1$ to preserve colimits and no bound on the cardinal of presentability :/
I just found the following exercise (page 127 ex. 2.l.) in Adámek-Rosicky's book: "Prove that a lax limit of locally $\lambda$-presentable categories and limit-preserving $\lambda$-accessible functors is locally $\lambda$-presentable". I believe the formation of the category of coalgebras over a comonad is a special case of a lax limit (a sort of lax equalizer). So at the very least even if this result is false (which now seems much less likely) a counterexample was not known to them when they wrote the book.
That's a good counterexample for the case of coalgebras over just endofunctors. But I must say I have little to no experience with this notion so I can't decide if it counts as positive or negative evidence towards the statement for Comonads... Which I would be delighted to have a proof/counterexample for.
It's perhaps not the most important reason but "complex oriented" beyond the existence of chern classes means you can "integrate" cohomology classes along submersions of almost complex manifolds. I believe this was a crucial part in Hirzebruch's original proof of HRR theorem.