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See the link above for a copy of this question, previously answered. The question is not open, but this does not seem to be very well-known. The exact minimum (which is roughly quadratic in $n$) is determined in the paper eudml.org/doc/282667 "Brunnian links" by Gartside and Greenwood. This question also appeared recently again at math.stackexchange.com/questions/4845211/…
One can improve this to $\sim \sqrt N$. Choose $p$ minimal so that $p^2+p+1 > N$ and use the Singer construction of a perfect difference in the cyclic group of order $p^2+p+1$. There cannot be a gap larger than about $N^{1/2}$, by the Erdős--Turan bound.
If I understand correctly, a result of Nielsen states that the set of primitive elements $w$ such that $w$ and $x$ map to the same same element of $\mathbb Z^2$ is just the conjugacy class of $x$. (This is special to the rank-two free group.) It follows that $w = x^2 y x^{-1} y^{-1}$ is not primitive. Here "primitive" means "equivalent to $x$ by an automorphism", or equivalently "part of a free basis".
Maybe this answer should be posted on the original question too (maybe with an extra word or reference about why $\mathrm{Sym}(\omega)$ has the automatic continuity property?), since it is substantially different from the answer given there.
I agree with @YCor that my answer should not be accepted in its current form. Although I think it almost certain that such a group $S$ does not exist, it's not obvious, and I would be interested to see the demonstration. Also, I am actually not at all sure that $G = \prod_F F$ has no countable quotient covering every finite group, it was just a thought.
@AlessandroCodenotti There do not exist just-infinite groups covering all finite groups. Suppose $G$ were one. Then in particular we have surjections $f_n : G \to C_n$ for all $n$ and hence a map $(f_n) : G \to \prod C_n$ with infinite image, hence an embedding, which implies that $G$ is abelian.