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@მამუკაჯიბლაძე I am inclined to believe that one cannot have a Hopf-algebra PROP, in the same way that one cannot have an operad for groups, but I might be wrong.
@მამუკაჯიბლაძე there are also, if I understand correctly, properads and $\infty$-properads for bialgebras, which might be slightly more general. I am just not aware of anyone doing this for $E_n$.
@მამუკაჯიბლაძე compatibility conditions are NOT worked out anywhere. the best I can do is what I said above, but writing down what that means geometrically or combinatorially seems like an unbelievable mess.
In the case that $V$ is co-complete then the category of $V$-enriched symmetric multicategories (aka symmetric colored operads) is co-complete. This is discussed here: arxiv.org/abs/1111.4146, but it really is a straightforward generalization of the statements in the paper by Elmendorff and Mandell cited in that paper.