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When does a discrepant toric resolution induce a crepant resolution of a subvariety?

Let $Y$ be a complete intersection in a complete simplicial toric variety $X_\Sigma$ such that $\DeclareMathOperator{Sing}{Sing}\Sing(Y)\subset\Sing(X_\Sigma)$. Suppose that $\phi:X_{\widehat{\Sigma}} …