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(Co)chain complexes, abelian Categories, (pre)sheaves, (co)homology in various (possibly highly generalized) settings, spectra, derived functors, resolutions, spectral sequences, homotopy categories. Chain complexes in an abelian category form the heart of homological algebra.
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Short exact sequences every mathematician should know
I don't know whether this is a SES that every mathematician should know but it does satisfy the first sentence of the body of your question, since one could say it captures triangulability:
$$ 0 \to \ …