An example of an important solution to a little-known problem might be
Frank P. Ramsey's "On a problem of formal logic" in Proc. London Math.
Soc. 30 (1930) 264-286. The problem was in logic and not well-known even
to logicians, but Ramsey's solution was taken up by combinatorialists 
(notably Erdős and Szekeres) and it grew into the important field now known as
Ramsey theory.

{Added later] An example of the contrary type is [Hilbert's fifth problem][1].
This was a well known and difficult problem, worked on by eminent
mathematicians such as von Neumann and Pontryagin, and it took
more than 50 years to solve. Yet, by the time it was solved it
seemed to be no longer in the mainstream of Lie theory, and books
on Lie theory today make little mention of it.

PS. I agree that this question should be community wiki.

[1]:http://en.wikipedia.org/wiki/Hilbert%27s_fifth_problem