Since the ordinary Serre spectral sequence is about a fibration of spaces, I don't think you can just talk about a "fibration of spectra" and expect that to be a generalization, since the suspension spectrum functor doesn't preserve fibration sequences.  However, there is a version of the Serre spectral sequence involving *parametrized spectra*, which one can think of as a fibration whose base is an ordinary space and whose fibers are spectra.  It can be found in section 20.4 of May-Sigurdsson, [Parametrized Homotopy Theory](http://arxiv.org/abs/math.AT/0411656).