I've been thinking about Bertrand Toen's approach to studying the homotopy theory of schemes, and I've come across an inconsistency in my understanding of the subject that I was hoping somebody might be able to iron out for me.

If I take a field $k$ of characteristic $\neq\ell$, then if I have understood this

http://www.aimath.org/WWN/motivesdessins/Toen.pdf

correctly, there should be an $\ell$-adic schematic homotopy type $h(X)$ associated to every smooth and projective variety over $k$, such that the 'absolute' $\ell$-adic cohomology of $X$, which coefficients in a local system, can be calculated as an appropriate hom set inside the derived category of perfect complexes on $h(X)$. Specifically, I understood that the derived category of perfect complexes on $h(X)$ should be equivalent to the full subcategory of the usual $\ell$-adic derived category $D^b_c(X_{\mathrm{et}},\mathbb{Q}_\ell)$ whose cohomology sheaves are lisse.

The reason this is confusing me is because I also thought that the schematic homotopy type associated to the point $\mathrm{Spec}(k)$ should be the classifying stack $BG_k^\mathrm{alg}$ associated to the $\mathbb{Q}_\ell$ pro-algebraic completion $G_k^\mathrm{alg}$ of the absolute Galois group of $k$.

But the derived category of perfect complexes $D_\mathrm{perf}(BG_k^\mathrm{alg})$ on this classifying stack, as far as I can tell, should not be equivalent to $D^b_c(\mathrm{Spec}(k)_\mathrm{et},\mathbb{Q}_\ell)$ - if I take some finite dimensional continuous $G_k$-representation $V$ then the cohomology computed in the former category will be the algebraic group cohomology 
$$\mathrm{Hom}_{D_\mathrm{perf}(BG_k^\mathrm{alg})}(\mathbb{Q}_\ell,V[i])=H^i(G_k^\mathrm{alg},V)$$
whereas the cohomology computed in the latter category will be continuous group cohomology 
$$\mathrm{Hom}_{D^b_\mathrm{lisse}(X_\mathrm{et},\mathbb{Q}_\ell)}(\mathbb{Q}_\ell,V[i])=H^i_\mathrm{cts}(G_k,V).$$
These two won't coincide, and this suggests that there are no suitable subcategories of $D_{\mathrm{perf}}(BG_k^\mathrm{alg})$ and $D^b_c(\mathrm{Spec}(k)_\mathrm{et},\mathbb{Q}_\ell)$ that will coincide. 

So what's going on? I've convinced myself that the two expectations
$$ D_\mathrm{perf}(h(X))\cong D^b_\mathrm{lisse}(X_\mathrm{et},\mathbb{Q}_\ell)$$
and 
$$h(\mathrm{Spec}(k))\cong BG_k^\mathrm{alg} $$
are incompatible - so which one should I hold on to? Or have I missed a trick somewhere?

EDIT: Clarified what I mean by the 'cohomology' calculated in both categories.