In addition to the books you list, there is also the book Nonnegative Matrices by H. Minc (1974), but it is outdated and out of print.
Also, the book Combinatorial Matrix Theory by Brualdi and Ryser does a nice treatment of the combinatorial structure of nonnegative matrices (and complex matrices in general).
IMHO, a new textbook on nonnegative matrices is long overdue (an entire monograph could be devoted to the nonnegative inverse eigenvalue problem alone).