Let $\mathrm x, \mathrm y \in \mathbb R^n$. Let $\mathrm P_1$ and $\mathrm P_2$ be $n \times n$ permutation matrices such that the entries of $\mathrm P_1 \mathrm x$ and $\mathrm P_2 \mathrm y$ are in ascending order.
Let $m := \binom{n}{2}$. Let $\mathrm C$ be the $m \times n$ oriented incidence matrix of the (undirected) complete graph $K_n$ such that $\mathrm C \mathrm z$ is a nonnegative difference vector if the entries of $\mathrm z \in \mathbb R^n$ are in ascending order.
Using the Euclidean distance, the squared distance between the difference vectors is
$$\| \mathrm C \mathrm P_1 \mathrm x - \mathrm C \mathrm P_2 \mathrm y \|_2^2 = \| \mathrm C \left( \mathrm P_1 \mathrm x - \mathrm P_2 \mathrm y \right) \|_2^2 = \left( \mathrm P_1 \mathrm x - \mathrm P_2 \mathrm y \right)^{\top} \mathrm C^{\top} \mathrm C \left( \mathrm P_1 \mathrm x - \mathrm P_2 \mathrm y \right)$$
where
$$\mathrm C^{\top} \mathrm C = n \mathrm I_n - 1_n 1_n^{\top} =: \mathrm L$$
is the (symmetric, positive semidefinite) Laplacian of $K_n$. The spectrum of $\mathrm L$ contains eigenvalue $n$ with multiplicity $n-1$ and eigenvalue $0$ with multiplicity $1$. The null space of $\mathrm L$ is spanned by $1_n$.
In the fortunate case where the same permutation puts both $\mathrm x$ and $\mathrm y$ in ascending order, i.e., there exists an $n \times n$ permutation matrix $\mathrm P$ such that the entries of $\mathrm P \mathrm x$ and $\mathrm P \mathrm y$ are in ascending order,
$$\| \mathrm C \mathrm P \mathrm x - \mathrm C \mathrm P \mathrm y \|_2^2 = \left( \mathrm x - \mathrm y \right)^{\top} \underbrace{\mathrm P^{\top} \mathrm L \, \mathrm P}_{= \mathrm L} \left( \mathrm x - \mathrm y \right) = \left( \mathrm x - \mathrm y \right)^{\top} \mathrm L \left( \mathrm x - \mathrm y \right)$$
If $1_n^{\top} \mathrm x = 0$ and $1_n^{\top} \mathrm y = 0$, then $\mathrm x$ and $\mathrm y$ are orthogonal to the null space of $\mathrm L$ and, thus,
$$\| \mathrm C \mathrm P \mathrm x - \mathrm C \mathrm P \mathrm y \|_2^2 = \left( \mathrm x - \mathrm y \right)^{\top} \mathrm L \left( \mathrm x - \mathrm y \right) \geq \lambda_{n-1} (\mathrm L) \| \mathrm x - \mathrm y \|_2^2 = n \, \| \mathrm x - \mathrm y \|_2^2$$
If $n \geq 2$, then
$$\boxed{\| \mathrm C \mathrm P \mathrm x - \mathrm C \mathrm P \mathrm y \|_2 \geq \sqrt{n} \, \| \mathrm x - \mathrm y \|_2 \geq \| \mathrm x - \mathrm y \|_2}$$
Note that the condition $\mathrm x^{\top} \mathrm y \geq 0$ (i.e., the angle between $\mathrm x$ and $\mathrm y$ is at most $\frac{\pi}{2}$) was not used.