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Some early papers concerning SDEs on manifolds are:

and see also,

In addition, here are some highly cited books on stochastic differential geometry

On the topic of sampling on manifolds, see the following expository paper and the references given in their discussion of related literature:

  • Diaconis, P., Holmes, S. and Shahshahani, M. (2013). Sampling from a manifold. Advances in Modern Statistical Theory and Applications: A Festschrift in Honor of Morris L. Eaton. Institute of Mathematical Statistics. 102-125.