This is an edited version of an earlier hasty try, which went off the tracks and was removed. As both Xandi Tuni and Someone have made clear in their comments, the answer to the stated question is "no": even if the representation is otherwise well-behaved, it can easily take a diagonal matrix to one which is not diagonalizable over too small a field (but is semisimple and therefore does diagonalize over an extension field).
The question gets a little confusing when algebraic group language is added. But on the level of finite groups in nonzero characteristic, it's useful to keep in mind that Jordan decomposition in the algebraic group sense has intrinsic meaning: given a prime $p$, an element of a finite group decomposes uniquely as a product of two commuting elements, one of $p$-power order and the other of order prime to $p$. This decomposition is preserved under any finite group homomorphism.
In any case, the initial question concerns only finite groups of Lie type. Just the case when the representation is nontrivial needs to be considered.
For the given group $G =$ SL$_2(q)$, whose order is $q(q-1)(q+1)$, the matrices which are already diagonal have orders dividing $q-1$ (while other semisimple elements have orders dividing $q+1$ and can be diagonalized over a quadratic extension of $\mathbb{F}_q$). On the other hand, $G$ is simple if $p=2$ and simple modulo a center of order 2 if $p$ is odd, while it has an element of order $q-1$. If the representation takes such an element to a diagonal matrix, it follows (since the representation is nontrivial and $G$ almost simple) that the field $k$ must have at least $q$ elements.
Conversely, if $k$ is at least this big, the image of an element of order dividing $q-1$ still has order dividing $q-1$ and thus can be diagonalized over $k$ (no matter what $G$ is).
Xandi's argument involves some of the same ideas, but fails to use the fact that the ambient group $G$ is almost simple. (The third paragraph isn't convincing.) It isn't enough to consider just a representation of an arbitrary finite linear group containing a diagonal matrix.