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David Eppstein
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I think the answers already given by Thomas Kalinowski are more comprehensive, but Douglas B. West maintains another collection of open problems in graph theory at http://www.math.illinois.edu/~dwest/openp/ and there are also several graph theory problems listed at https://en.wikipedia.org/wiki/List_of_unsolved_problems_in_mathematics#Graph_theory

David Eppstein
  • 18.6k
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  • 55
  • 127