In PDE and related analysis, there are a lot of good journal, among which the recent Analysis and PDE (by MSP, the publishers of Geometry & Topology) and the much older Archive for Rational mechanics and Analysis seem to stand on top. Also noticeable are Annales de l'IHP - analyse non linéaire, Communication on PDE, SIAM journal on mathematical analysis, and certainly other that I forget.
Benoît Kloeckner
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