There are two different ways to understand the question:
If I see an abstract spectral seqeunce, is there a double complex such that its spectral sequence is isomorphic to the given spectral sequence? I do not have an answer to that question and, to be honest, do not believe it is an interesting question.
For wich set of names ''$XY$''; the $XY$-spectral sequence can be derived from a double complex?
The answer is that, as a general rule (it might have exceptions), all $XY$-spectral sequences whose $E_2$-terms and $E_{\infty}$ terms are purely homological can be derived from filtered complexes; and most of them in fact from double complexes.
Examples:
The spectral sequence of a simplicial space (Segal; ''Classfying spaces and spectral sequences'') can be reformulated using a double complex (a simplicial space $X_{\bullet}$ gives rise to a simplicial chain complex $C_{\ast} X_{\bullet}$ and thus a double complex.
The Serre spectral sequence is a special case of the above; a direct construction using a double complex was given by A. Dress, ''Zur Spectralsequenz von Faserungen''.
Special cases of 2. include the Lyndon-Hochschild-Serre spectral sequ. for group extensions; special cases of 1. include the Bousfield-Kan spectral sequ. of a homotopy colimit and some others.
The Eilenberg-Moore spectral sequence comes from a double complex.
Purely algebraic versions: Grothendieck-spectral sequence. Probably the spectral sequence of a Lie algebra extension fits into here. The Van Est spectral sequence for Lie algebra cohomology also comes from a double complex.
The Bockstein spectral sequence is a purely homological construction, it can be derived from a filtered complex; but it does not seem to stem from a double complex. Other counterexamples are the typical spectral sequence of stable homotopy theory (Atiyah-Hirzebruch, Adams spectral sequence): they cannot be derived from filtered complexes. In fact, if $E$ is a generalized homology theory, you cannot write $E_{\ast} (X)$ of a space in a sensible way as the homology of a chain complex functorially associated with $X$.