Questions tagged [persistent-homology]

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Motivation for persistent homology with respect to eigenfunctions of distance kernel operator in a recent preprint

I have a question about a recent preprint https://arxiv.org/pdf/1912.02225.pdf by Maria, Oudot, and Solomon. As far as I understand, in Section 8 they prove that persistent homology (persistence ...
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2answers
183 views

Is there an upper bound on the number of points in point cloud for which we compute the persistent homology?

I am interested in the topic of persistent homology (topological data analysis). According to what I read, there is some roadblock in the analysis of "big data" using persistent homology as it is ...
2
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1answer
88 views

Persistent homology stability results (query about Lipschitz functions)

One of the beneficial properties of persistent homology is its stability results (so called robustness to noise). Usually the referenced paper is this paper titled "Lipschitz functions have $L_p$-...
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0answers
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Coarsifying persistence modules

The context Let $I=[0,∞)$ and consider the category of persistence modules $(V,π)$ indexed over $I$ satisfying: For all $t$ in $I$ but a closed discrete set of points $T$, there exists a ...
2
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0answers
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Discrete Morse theory, choice of Morse function, and removing noise

If I have a simplicial complex, and a discrete Morse function defined on the simplices, I can use persistent homology to produce a barcode which helps me distinguish "persistent" shape from noise. To ...
6
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1answer
250 views

Approximate homology of a large simplicial complex

I can use software to calculate the Betti numbers $\beta_0,\beta_1,\beta_2,\dots$ of a finite simplicial complex. This is prohibitive for large complexes, built on say > 100,000 nodes. Is there some ...
33
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5answers
2k views

Reference on Persistent Homology

I will be teaching a course on algebraic topology for MSc students and this semester, unlike previous ones where I used to begin with the fundamental group, I would like to start with ideas of ...
2
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1answer
96 views

On the entries of a matrix representation for a boundary operator of a persistence module

In equation 6 of Computing Persistent Homology (page 8), the authors put forward the following identity: $$\deg \hat{e_i}+\deg M_k (i,j)=\deg e_j$$ Where $\hat{e_i}$ and $e_j$ are elements of ...
29
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1answer
2k views

Why is persistent cohomology so much faster than persistent homology

I refer to this paper: de Silva, Vin; Morozov, Dmitriy; Vejdemo-Johansson, Mikael. Dualities in persistent (co)homology. Inverse Problems 27 (2011), no. 12, 124003, 17 pp. (Journal link, arXiv link). ...
8
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1answer
407 views

Persistent homology over the integers

Is it likely that in the future, there will be interest in computing persistent homology over the integers (or other PIDs)? Currently, persistent homology is usually done over a field (like $\mathbb{...
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1answer
311 views

Clarification of “death event” in persistent homology

Before I ask my question let me clarify some notation: $f^{i,j}_r$, where $i < j$, refers to the inclusion map $f: H_r(X_i) \hookrightarrow H_r(X_j)$. $X_i$ and $X_j$ are subcomplexes of a filtered ...
12
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3answers
523 views

Category of data sets, motivated by persistent homology?

Is there a useful or agreed-upon category of data sets? In particular, I'm thinking about a point cloud and wondering what an acceptable morphism between point clouds "should" be. Edit/Clarification:...
6
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1answer
253 views

Correspondence between persistence module and graded module over $R[t]$

In the paper "Computing Persistent Homology" by Zomorodian and Carlsson, it is stated as Theorem 3.1 that: The correspondence $\alpha$ defines an equivalence of categories between the category of ...
21
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2answers
1k views

Research directions in persistent homology

I am interested in what are the possible directions for new research in persistent homology (more of the mathematical theoretical aspects rather than the computer algorithm aspects). So far from ...
7
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1answer
189 views

Computing homology of subvarieties of Euclidean spaces by persistent homology

Let $M$ be a submanifold of the Euclidean space $\mathbb{R}^n$. Let $G$ be a finite group acting on $M$ freely. I want to compute the homology (or even the cohomology ring) of $M/G$. Suppose the ...
22
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3answers
2k views

Persistent homology of Gaussian fields in Euclidean space

If you generate points in $\mathbb R^n$ via a process that respects a Gaussian normal distribution, then compute the persistent homology / barcodes, to my eye something fairly regular seems to be ...
7
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1answer
686 views

Persistent homology of Markovian dynamical systems

Consider a dynamical system $(T,X)$ that admits a Markov partition $\mathcal{M}$ (e.g., an Anosov map), and consider the corresponding 0-1 transition matrix $A$. It is commonplace to study information ...