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How to solve a optimal matching problem where the "quality" of matching is only determined once all nodes are matched
Note: I'm not a mathematician; I'm just a biologist with basic math background trying to solve a scientific problem, so please excuse my ignorance.
The gist of the problem is as follows:
I have two ...
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Combinatorial graph optimization problem on integer adjacency matrices
We are given a $n\times n$ symmetric matrix $M$ whose entries are positive integers.
Let $z_{i,j}:=\frac{M_{i,j}}{M_{i,j}+\sum_{k\neq i,j}\min(M_{i,k},M_{k,j})}$ for all $1\le i<j \le n$, and
$z:=\...
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Complexity of reordering a matrix which consists independent sub matrices
Introduction:
Given a matrix A of a $k$ regular graph G. The matrix A can be divided into 4 sub matrices based on adjacency of vertex $x \in G$.
$A_x$ is the symmetric matrix of the graph $(G-x)$, ...