Given a memoryless ergodic channel $P(Y|X)$, the Shannon capacity of that channel $C$ is given by $C = \max_{p(x)} I(X;Y)$ where $I(\cdot,\cdot)$ is the mutual information and the maximization is over all input distributions (possibly subject to some constraints such as transmit power). This statement does not assume anything about the symmetric nature of the channel.
In the example that you mentioned (I am assuming that $P(Y=1 | X = 0) = p_1$ and $P(Y=0 | X = 1) = p_2$ which is the reverse of your notation), the capacity can be calculated as follows. Let us assume that $P(X = 0) = \alpha$ and $P(X = 1) = \beta = 1 - \alpha$. Also, let $q_i = 1-p_i$ for $i = 1,2$. The output distribution becomes $P(Y = 0) = \alpha q_1 + \beta p_2$. The conditional entropy of $Y$ given $X$ is
$H(Y|X) = \alpha h(p_1) + \beta h(p_2)$
where $h(\cdot)$ is the binary entropy function. The mutual information is given by
$I(X;Y) = H(Y) - H(Y|X)$ = $h(\alpha q_1 + \beta p_2) - \alpha h(p_1) - \beta h(p_2)$
Optimizing this over $\alpha$ will give us the capacity of this channel. This is messy and probably doesn't have a nice closed form expression which is one of the reasons why such examples don't show up in textbooks.
It is another question to ask how this capacity can be achieved, i.e., what kind of coding over the input alphabets can get us to this capacity? It is in this context that the channel symmetry becomes important - linear codes (which are a very important family of practically relevant codes) can be shown to approach channel capacity only for symmetric channels. Here, the notion of symmetry must be carefully defined but for the simple case of binary channel inputs, it will agree with the obvious definition ($p_1 = p_2$ in your notation).