This is not a complete answer.
Claim 1. Let $D=b^2-4ac$. If $\left( \frac{D}{p}\right)=-1$, then $$S_p(a,b,c)\equiv a\frac{(p-1)^2}{4}+b\frac{(p-1)(p-3)}{8}\pmod{2}.$$
Proof.
Let $f(x,y)=ax^2+bxy+cy^2$. Then
\begin{align}
S_p(a,b,c)&\equiv\sum_{1\le j<k\le p-1\atop p\nmid f(j,k),2\nmid j, 2\nmid k}f(j,k)+\sum_{1\le j<k\le p-1\atop p\nmid f(j,k),2\nmid j, 2\mid k}f(j,k)+\sum_{1\le j<k\le p-1\atop p\nmid f(j,k),2\mid j, 2\nmid k}f(j,k)\\
&\equiv \sum_{1\le j<k\le p-1\atop p\nmid f(j,k),2\nmid j, 2\nmid k}(a+b+c)+\sum_{1\le j<k\le p-1\atop p\nmid f(j,k),2\nmid j, 2\mid k}a+\sum_{1\le j<k\le p-1\atop p\nmid f(j,k),2\mid j, 2\nmid k}c\pmod{2}.
\end{align}
Noting that $\left( \frac{D}{p}\right)=-1$, it follows that
$$4af(j,k)=(2aj+bk)^2-Dk^2\not\equiv 0\pmod{p}.$$
So $$f(j,k)\not\equiv 0\pmod{p}.$$
Therefore
$$\sum_{1\le j<k\le p-1\atop p\nmid f(j,k),2\nmid j, 2\nmid k}1 =\sum_{1\le j<k\le p-1\atop 2\nmid j, 2\nmid k}1= \frac{p^2-4p+3}{8},$$
$$\sum_{1\le j<k\le p-1\atop p\nmid f(j,k),2\nmid j, 2\mid k}1 =\sum_{1\le j<k\le p-1\atop 2\nmid j, 2\mid k}1= \frac{p^2-1}{8},$$
$$\sum_{1\le j<k\le p-1\atop p\nmid f(j,k),2\mid j, 2\nmid k}1 =\sum_{1\le j<k\le p-1\atop 2\mid j, 2\nmid k}1= \frac{p^2-4p+3}{8}$$
and
\begin{align}
S_p(a,b,c)&\equiv(a+b+2c)\frac{p^2-4p+3}{8}+a\frac{p^2-1}{8}\\
&\equiv a\frac{(p-1)^2}{4}+b\frac{(p-1)(p-3)}{8} \pmod{2}.
\end{align}
Remark 1.
Calculations show that if $2\nmid a$, $2\nmid b$, $2 \mid c$ and $\left( \frac{D}{p}\right)=1$, then for almost all odd prime $p$, $S_p(a,b,c)\equiv a\frac{(p-1)^2}{4}+b\frac{(p-1)(p-3)}{8}\pmod{2}.$
For example, when $(a,b,c)=(123,567,456)$,$\left( \frac{D}{p}\right)=1$ and $p\leq 1987$, $$S_p(123,567,456)\equiv 123\frac{(p-1)^2}{4}+567\frac{(p-1)(p-3)}{8}\pmod{2}$$
except for $p=19.$
Conj. If $2\nmid a$, $2\nmid b$, $2 \mid c$, $\left( \frac{D}{p}\right)=1$ and $\left( \frac{ac(a+b+c)}{p}\right)\neq 0$, then $$S_p(a,b,c)\equiv a\frac{(p-1)^2}{4}+b\frac{(p-1)(p-3)}{8}\equiv\frac{p^2-1}{8}\pmod{2}.$$