I guess we can say the following, though I would still be interested if someone else could provide a different perspective and/or corrections.
If we have a family of such geometric objects over an integral, finite type $k$-scheme $X$, such that the generic member of this family is given by some $k$-point $Q: \operatorname{Spec} k \to \mathcal{X}$, then any point $P: \operatorname{Spec}k \to X \to \mathcal{X}$ is contained in the closure of $Q$ in $|\mathcal{X}|$.
Proof: Let $\mathcal{Z} \to \mathcal{X}$ be a closed substack of $\mathcal{X}$ with $Q \in |\mathcal{Z}|$ (Stacks Tag 0509). We want to show that $P \in |\mathcal{Z}|$. By the definition of a closed immersion, the morphism $X \times_{\mathcal{X}} \mathcal{Z} \to X$ is a closed immersion of schemes, and we have a surjection of topological spaces $|X \times_{\mathcal{X}} \mathcal{Z}| \to |X| \times_{|\mathcal{X}|} |\mathcal{Z}|$ (Stacks Tag 04XH). Moreover, since $Q \in |\mathcal{Z}|$, we have by considering this surjection that $|X \times_{\mathcal{X}} \mathcal{Z}|$ contains a dense open subset of $|X|$. Since the morphism $|X \times_{\mathcal{X}} \mathcal{Z}| \to |X|$ is closed, it follows by irreducibility that $|X \times_{\mathcal{X}} \mathcal{Z}| = |X|$, and consequently there exists a point $P' \in |X \times_{\mathcal{X}} \mathcal{Z}|$ mapping to $P \in |X|$. Considering the image of $P'$ in $|Z|$ via the projection, we find that $P \in |Z|$, as desired.
Conversely, I would expect that if $P \in \overline{\{Q\}}$, then there exists a family over an $X$ as above, maybe by taking a smooth cover of a reduced closed substack $\mathcal{Z} \to \mathcal{X}$ with $|\mathcal{Z}| = \overline{\{Q\}}$.