The answer to all three questions is Yes.
#2 This part is easy. If $i>d$ or $j>d$, then set $A_{i,j}=0_{d\times d}$, and if
$i\leq d$ and $j\leq d$, then let $A_{i,j}$ be the $d\times d$-matrix where the $i,j$-th entry is $1$ but every other entry is zero. Then $\rho(A)^2=\min(m,d)\cdot\rho(\sum_{i,j}A_{i,j}\otimes A_{i,j})$. Therefore, this inequality is sharp.
#1 and #3
For generality and to put this answer in the context of quantum information theory, let me answer in the case when each $A_{i,j}$ is a complex matrix (we have to modify the statements of 1,2,3 though). We will only answer this question in the case when $d\leq m$ since fedja's answer already answers #1 for all real cases.
For this answer, we shall hold to the convention that if $A$ is a $dm\times dm$-matrix, then $(A_{i,j})_{i,j}$ are the submatrices of $A$ such that $A$ becomes a block matrix with blocks $A_{i,j}\in M_{d}(\mathbb{C})$ whenever $1\leq i\leq m,1\leq j\leq m$.
Let $L(\mathbb{C}^d)$ denote the collection of all linear operators $A:\mathbb{C}^d\rightarrow\mathbb{C}^d$. Suppose that $\mathcal{E}:L(\mathbb{C}^d)\rightarrow L(\mathbb{C}^d)$ is a linear operator. Then $\mathcal{E}$ is said to be trace preserving if $\text{Tr}(\mathcal{E}(A))=\text{Tr}(A).$ We say that $\mathcal{E}$ is positive if $\mathcal{E}(A)$ is positive semidefinite whenever $A$ is positive semidefinite. We say that $\mathcal{E}$ is completely positive if whenever $V$ is a finite dimensional complex Hilbert space, we have $\mathcal{E}\otimes 1_{L(V)}:L(\mathbb{C}^{d}\otimes V)\rightarrow L(\mathbb{C}^{d}\otimes V)$. We say that $\mathcal{E}$ is a quantum channel if $\mathcal{E}$ is completely positive and trace preserving.
The mapping $\mathcal{E}$ is completely positive if and only if there are $A_1,\dots,A_r$ with $\mathcal{E}(X)=A_1XA_1^*+\dots+A_rXA_r^*$ for each $X\in L(\mathbb{C}^d)$. The mapping $\mathcal{E}$ is a quantum channel if and only if there are $A_1,\dots,A_r$ with $\mathcal{E}(X)=A_1XA_1^*+\dots+A_rXA_r^*$ for each $X\in L(\mathbb{C}^d)$ and $A_1^*A_1+\dots+A_r^*A_r=1_{d}$. Observe that if $\mathcal{E}$ is a quantum channel, then $\rho(\mathcal{E})=1$.
If $A_{i,j}$ is an $d\times d$-matrix whenever $1\leq i\leq m$ and $1\leq j\leq m$, then define a superoperator $\Phi((A_{i,j})_{i,j}):L(\mathbb{C}^d)\rightarrow L(\mathbb{C}^d)$ by letting $\Phi((A_{i,j})_{i,j})(X)=\sum_{i,j}A_{i,j}XA_{i,j}^*$. When we generalize #1 to complex matrices, this statement becomes $\rho(A)^2\leq\min(d,m)\rho(\Phi((A_{i,j})_{i,j})$. #3 when generalized states that if $\rho(A)^2=d\cdot\rho(\Phi((A_{i,j})_{i,j})$ and $d\leq m$, then $\text{Rank}(A_{i,j})=1$ for each $i,j$.
Let $O$ be the collection of all systems $(A_{i,j})_{i,j}\in M_d(\mathbb{C})^{m\times m}$ where $\Phi((A_{i,j})_{i,j})$ is not nilpotent. Let $E$ be the collection of all systems
$(A_{i,j})_{i,j}\in M_d(\mathbb{C})^{m\times m}$ where there is some $\lambda>0$ and $B$ where
$\Phi((\lambda BA_{i,j}B^{-1})_{i,j})$ is a quantum channel. By the arguments that I gave in this answer, the set $E$ is dense in $L(\mathbb{C}^{d})^{m\times m}$. Let $E^{\uparrow}$ (respectively $O^{\uparrow}$) be the collection of all matrices $A\in M_{md}(\mathbb{C})$ where $(A_{i,j})_{i,j}\in E$ (respectively $(A_{i,j})_{i,j}\in O$).
Suppose that $\Phi((A_{i,j})_{i,j})$ is a quantum channel. Then
$$d=\text{Tr}(1_d)=\text{Tr}(\sum_{i,j}A_{i,j}^{*}A_{i,j})=\sum_{i,j}\|A_{i,j}\|_{2}^{2}.$$
Therefore, we have $\rho(A)^2\leq\|A\|_{\infty}^2\leq \|A\|_{2}^2\leq d$. Furthermore, if
$\rho(A)^2=d$, then $\|A\|_{\infty}=\|A\|_{2}$, and this is only possible if $\text{Rank}(A)=1$ which implies that $\text{Rank}(A_{i,j})\leq 1$ as well.
Suppose that $(A_{i,j})_{i,j}\in E$. Then there is some $\lambda>0$ and some invertible $B$ where $\Phi((\lambda BA_{i,j}B^{-1})_{i,j})$ is a quantum channel. Suppose now that $C$ is the block matrix with blocks $(\lambda BA_{i,j}B^{-1})_{i,j}$. Then
$$\frac{\rho(A)^2}{\rho(\Phi((A_{i,j})_{i,j})}=\frac{\rho(C)^2}{\rho(\Phi((\lambda BA_{i,j}B^{-1})_{i,j})}=\rho(C)\leq d.$$
Therefore, $$\rho(A)^2\leq d\cdot \rho(\Phi((A_{i,j})_{i,j}).$$
Furthermore, if $(A_{i,j})_{i,j}\in E$, and $\rho(A)^2=d\cdot \rho(\Phi((A_{i,j})_{i,j})$, then we know that $\text{Rank}(C)=1$, so $\text{Rank}(A)=1$ as well, and therefore $\text{Rank}(A_{i,j})=1$ for each $i,j$.
Since $E$ is dense $(L(\mathbb{C}^{d}))^{m\times m}$, we conclude that
$$\rho(A)^2\leq d\cdot \rho(\Phi((A_{i,j})_{i,j})$$ whenever $(A_{i,j})_{i,j}\in (L(\mathbb{C}^{d}))^{m\times m}.$
I now claim that whenever $A\in L(\mathbb{C}^{m\times d})$, if $\rho(A)^2=d\cdot \rho(\Phi((A_{i,j})_{i,j})\neq 0$, then $\text{Rank}(A)=1$.
We shall now define functions $f:O^{\uparrow}\rightarrow\mathbb{R},g:M_{md}(\mathbb{C})\rightarrow\mathbb{R}$. Set $f(A)=\frac{\rho(A)^2}{\rho(\Phi((A_{i,j})_{i,j})}$ for $A\in O^{\uparrow}$. Then the function $f$ is continuous. Let $$g(A)=\frac{|\lambda_{2}^2|}{\rho(\Phi((A_{i,j})_{i,j}))}$$ where $\lambda_{1},\dots,\lambda_{m\cdot d}$ are the eigenvalues of $A$ ordered so that $|\lambda_{1}|\geq|\lambda_{2}|\geq\dots\geq|\lambda_{m\cdot d}|$. The motivation behind the function $g$ is that for $A\in O^{\uparrow}$, $\text{Rank}(A)\leq 1$ precisely when $g(A)=0$ and that $g(A)=g(C)$ whenever there is some $\lambda\neq 0$ and $B$ where $A_{i,j}=\lambda\cdot BC_{i,j}B^{-1}$ for all $i,j$.
Let $f(A)=d\leq m$. Let $\delta>0$. Then there is some $\epsilon>0$ where if
$\|A-H\|_2<\epsilon$, then $f(H)>d-\delta$.
Suppose that $\epsilon>0$. Then there is some $H\in E^{\uparrow}$ where $\|A-H\|_2<\epsilon$, and therefore $f(H)>d-\delta$. Now, since $H\in E^{\uparrow}$, there are $\lambda,B$ where if $C_{i,j}=\lambda\cdot B\cdot H_{i,j}\cdot B^{-1}$ for each $i,j$, then $\Phi((C_{i,j})_{i,j})$ is a quantum channel. Therefore, $f(C)=f(H)>d-\delta$.
Therefore, we have $d-\delta\leq\rho(C)^2\leq\|C\|^2_\infty\leq\|C\|_2^2\leq d.$ Now, let $\lambda_1,\dots,\lambda_{md}$ be the eigenvalues of $C$, and let
$\sigma_1,\dots,\sigma_{md}$ be the singular values of $C$. Suppose that
$|\lambda_1|\geq|\lambda_2|\geq\dots\geq|\lambda_{md}|$. Then
$$d-\delta\leq\max(|\lambda_1|^2,\dots,|\lambda_{md}|^2)\leq |\lambda_1|^2+\dots+|\lambda_{md}|^2\leq \sigma_1^2+\dots+\sigma_{md}^2\leq d.$$
Thus $d-\delta\leq|\lambda_1|^2\leq|\lambda_1|^2+|\lambda_2|^2\leq d$, so
$d-\delta+|\lambda_2^2|\leq d$. Therefore, $|\lambda_2^2|\leq\delta$.
We conclude that $g(H)=g(C)\leq\delta$.
Therefore, $g(H)\rightarrow 0$ as $H\rightarrow A,H\in E^{\uparrow}$. Therefore, $g(A)=0$ which means that $\text{Rank}(A)\leq 1$ and therefore $\text{Rank}(A_{i,j})\leq 1$ for all $i,j$.