Definition. A semigroup $X$ is called $E$-separated if for any distinct idempotents $x,y\in X$ there exists a homomorphism $h:X\to Y$ to a semilattice $Y$ such that $h(x)\ne h(y)$.
Observe that $X$ is $E$-separated if and only if the smallest semilattice congruence on $X$ is idempotent-separating. This seems to be an important notion, so I suggest that it could (and should) be studied in Theory of Semigroups, maybe under some different name. Do you know any suitable references?