The following came up when reading the definition of the moduli stack of principally polarized abelian varieties in [1].
Let $\pi_1:A_1 \to S_1$ and $\pi_2: A_2 \to S_2$ be abelian schemes over $S_i$, i.e. each $A_i$ is a group scheme over $S_i$, such that $\pi$ is smooth, proper and has geometrically connected fibers. Suppose also that $\lambda_i$ are principal polarizations, i.e. isomorphisms $\lambda_i: A_i \to \hat A_i$.
In [1] Faltings and Chain define a morphism $(A_1, \lambda_1) \to (A_2, \lambda_2)$ to be a homomorphism $$\mu: A_1 \to A_2$$ such that $\mu^*(\lambda_2) = \lambda_1$.
First, I think the authors omitted that we also need a morphism $f: S_1 \to S_2$, such that $\pi_2 \circ \mu = f \circ \pi_1$, right?
But mostly I wonder what exactly $\mu^*(\lambda_2)$ means. The first thing that came to my mind is to take it as the composition $$\mu^*(\lambda_2): A_1 \xrightarrow{\mu} A_2 \xrightarrow{\lambda_2} \hat A_2 \xrightarrow{\hat \mu} \hat A_1,$$ however I'm not sure if $\hat \mu$ is even well-defined, since $A_1$ and $A_2$ do not have a common base. Sure, we could consider $A_1$ as a scheme over $S_2$ via $f$, but depending on the properties of $f$, $A_1$ will not be an abelian scheme over $S_2$. For example, why should it still be smooth?
Any help would be appreciated :)
[1] Faltings, Chai; Degeneration of Abelian Varieties