Let $X$ be a complex Fano manifold such that each extremal ray of $\overline{\text{NE}(X)}_{\mathbb{R}}$ is generated by a primitive class in $H_2(X;\mathbb{Z})$ of a free rational curve. Thus, the extremal rays are all fiber type. (The "primitive" hypothesis rules out, e.g., conic bundles where "half" of the fiber class is integral.)
Question. Is the cone of effective curves in $H_2(X;\mathbb{Z})$ a free $\mathbb{Z}_{\geq 0}$-semigroup, $\mathbb{Z}_{\geq 0}^r$?
There are many positive examples, e.g., Fano manifolds with a transitive (algebraic) action of a complex Lie group and complete intersections in these of low degree. However, for the general question, the best results that I have found are in the following article of Jaroslaw Wisniewski.
MR1639552 (2000e:14018)
Wiśniewski, Jarosław A.
Cohomological invariants of complex manifolds coming from extremal rays.
Asian J. Math. 2 (1998), no. 2, 289–301.
https://arxiv.org/abs/math/9803010