Let $X$ and $Y$ be two algebraic varieties over $\mathbb{C}$. I am interested in the cohomology of $\operatorname{Hom}(X_{top},Y_{top}),$ where I am taking homomorphisms between the underlying topological spaces rather than morphisms of algebraic varieties. Can I naturally attach a mixed Hodge structure to this cohomology?
I don't have a precise formulation of what I want from this mixed Hodge structure; I'm hoping for something like a spectral sequence converging to the cohomology whose morphisms are morphisms of mixed Hodge structures coming from $X$ and $Y$. I am really interested in analogous situations where I am considering some other Weil cohomology theory, but there my question is even less precise.
EDIT: I'm really interested in the case where $X$ and $Y$ are over some finite field, and I want a Galois rep which could be called the cohomology of $\operatorname{Hom}(X_{top},Y_{top})$ (as well as a computational procedure for computing it.) Maybe Jason's suggestion of etale homotopy theory in the comments is the way to go?