Edit (15 November 2017): I've just stumbled across this question, which I think is asking essentially the same thing I tried to ask below, but probably worded it more clearly - and got far more attention.

In linear algebra, any "meaningful" statement about (vectors in) a particular vector space $V$ will remain true under automorphisms of $V$, and this is the basis - no pun intended - for co-ordinate-free geometry.

More generally, any "structurally meaningful" statement about a given mathematical structure should remain true under automorphisms of the structure. Is it meaningful (or perhaps even valuable) to consider "co-ordinate-free" approaches to the study of structures outside the remit of differential geometry? I would be interested in any relevant literature.

The motivation for this question came from musing on choice functions, the identity of indiscernibles, and specifically what it means to talk about choice functions even on (hereditarily) finite sets when the elements of those sets are "structurally" indistinguishable, such as conjugate roots of a polynomial. The paper "Identity, Indiscernibility, and ante rem Structuralism: The Tale of i and −i" by Stewart Shapiro seems like it might be relevant, but I don't have access to it.

I'm not sure if I have the ability to make this question community wiki, but it probably should be. Apologies also for the mediocre tagging; I didn't feel able to make a well-informed decision about what tags would be appropriate.

Edit: if this question isn't considered to be of a level appropriate to MathOverflow, I would be happy for it to be migrated to math.stackexchange. However, I thought there might be more people here who were able to give an informed perspective on the subject.