Is the analytification functor part of a geometric morphism of topoi? Let $Sh(\mathsf{\mathbb{C}-fAlg}^{op})$ be the topos of zariski sheaves on finitely genertaed $\mathbb{C}$-algebras. 
A complex analytic space for our purpose is a locally ringed space locally isomorphic to an analytic subset of $\mathbb{C}^{n}$ (with the sheaf of holomorphic functions). Denote the category of these by $\mathsf{An}$ (for analytic). There's a grothendiek topology on the category given by jointly sujective open immersions (where open immersion are topological embeddings with locally isomorphic structure sheaves). Let $Sh(An)$ be the topos of analytic sheaves on analytic spaces. We have an affine analytification functor:
$$f: \mathsf{\mathbb{C}-fAlg}^{op} \to \mathsf{An}$$
Which associates to an affine $\mathbb{C}$ scheme the corresponding analytic subspace of $\mathbb{C}^n$. This morphism induces a pushforward for presheaves:
$$f_*: Psh(\mathsf{An}) \to Psh(\mathsf{\mathbb{C}-fAlg}^{op})$$
I'm afraid to say anything about sheaves at this point since I'm not so comfortable with toposes yet really. What I'd like to be able say is the following: 

(Extremely conjectural!) The pushforward $f_*$ extends to a morphism of topoi:
$$F_*: Sh(\mathsf{An}) \to Sh(\mathsf{\mathbb{C}-fAlg}^{op})$$
This morphism is geometric with left adjoint the analytification
  functor:
$$F^*:  Sh(\mathsf{\mathbb{C}-fAlg}^{op}) \to Sh(\mathsf{An})$$
In partuicular this functor sends schemes in
  $Sh(\mathsf{\mathbb{C}-fAlg}^{op})$ to analytic spaces.

Is there a way to make this precise?
I'm trying to see the analytification functor come out of general nonsense because it seems like the existence of it should be natural.
I'm obviously not talking about any powerful statements about properties of this functor like GAGA etc. I'm only looking for a natural way to define this functor. 
 A: I am not very familiar with the analytic side of the pictures or with the analytification functor but here is what I can claim, it seems from your comment that this answer your question:
If you have two subcanonical site $C$ and $D$ (it means that representable presheaves are sheaves, so it is the case with your example).
If $C$ has all finite limits.
If you have a functor $f :C \rightarrow D$ that preserves finite limits and send covering family in $C$ to covering family in $D$ then:
the precompostion with $f : Prsh(D) \rightarrow Prsh(C)$ send sheaves over $D$ to sheaves over $C$ and the restriction of this functor to sheaves defines the $f_*$ part of a geometric morphism:
$f_*: sh(D) \rightarrow sh(C)$
Moreover (easy to check from the universal property) $f^*$ send representable sheaves in $sh(C)$ to representable sheaves in $sh(D)$ in a way that extend $f: C \rightarrow D$.
You have more general claim of this sort on the nLab page morphism of sites
Or in more standard litterature, have a look to MacLane&Moerdijk "sheaves in geometry and logic" chapter VII, more specifically setion 9 and 10.
