Although Joel has already given an example showing why the answer to this question is no, I'm going to offer a few more examples, and some comments about the question.
First, here's a really easy example showing that a maximal contracting chain does not need to generate a maximal contracting filter. In the unit interval $[0,1]$, let
$$C = \{[0,a) \cup (1-a,1] : 0 < a < 1/2\} \cup \{[0,1]\}.$$
It's not too hard to check that this is a maximal contracting chain, but it obviously does not generate a maximal contracting filter.
The reason we can come up with such an easy counterexample is that "maximal contracting chain" is too weak a condition to hope realistically for a maximal filter. I'll venture to guess, though, that this isn't the sort of counterexample you're looking for -- it feels too much like cheating.
In order to do away with easy counterexamples like this one, I suggest we modify the question as follows:
If $C$ is a maximal contracting chain and $\mathcal F$ is a maximal contracting filter containing $C$, is there a (possibly different) maximal contracting chain $C'$ such that $C'$ generates $\mathcal F$?
Perhaps I'm taking too much license with your question here, and if so I apologize. But I like this version of the question because (1) it does away with the idea behind my easy counterexample, (2) the answer can depend on what space we're working in (i.e., this question is getting at some topological property).
An example where the answer is no: Let $T$ denote the Tychonoff Plank, $T = [0,\omega] \times [0,\omega_1]$. Let
$$C = \{(n,\omega] \times [0,\omega_1] \cup \{n\} \times [\alpha,\omega_1] : n < \omega, \alpha < \omega_1\}$$
It's not too hard to check that this is a maximal contracting chain in $T$. Let $\mathcal F$ be the neighborhood filter on the point $(\omega,\omega_1)$. This is a maximal contracting filter, but I claim that it cannot be generated by any chain $C'$. The reason is that the chain $C'$ has a certain cofinality $\kappa$. If $\kappa \neq \omega$, then for some fixed $n$ there are cofinally many elements of $C'$ containing sets of the form $[n,\omega] \times [\alpha,\omega_1]$. Since this happens cofinally often and $C'$ is a chain, every element of $C'$ contains a set of this form. This means that $C'$ cannot generate $\mathcal F$. We get a similar contradiction by supposing $\kappa \neq \omega_1$.
A class of spaces where the answer is always yes: If $X$ is a compact metric space then the answer (to my modified version of your question) is always yes. More generally, suppose $X$ is a compact space that is well-based, meaning that every point has a well-ordered neighborhood basis. Every metric space is well-based, but there are other spaces too (the order topology on $\omega_1+1$, for example). For any space in this class, I claim that every maximal contracting filter is generated by a chain (which is more than enough for an affirmative answer to our question). To see this, use compactness to say that a maximal contracting filter must just be the neighborhood filter of some point. Then use the well-based property to conclude that every maximal contracting filter is generated by a chain.
Another example where the answer is yes: Although every well-based space gives you an affirmative answer, I want to point out that there are other spaces that also work. For example, consider the space obtained by gluing the final point of $\omega_1+1$ to the final point of $\omega+1$ (where $\omega_1+1$ and $\omega+1$ are each given the order topology). This space is not well-based, because the "pit point" where the two spaces were glued together cannot have a well-ordered neighborhood basis (after all, what would its cofinality be?). However, this space still gives us an affirmative answer to our question. To see this, just notice that no maximal contracting chain contains the pit point (supposing it did, use a cofinality-matching argument like the one above to show that the chain is not maximal after all). Therefore every maximal contracting chain $C$ can be thought of as a maximal contracting chain in one of the subspaces $\omega+1$ or $\omega_1+1$. Since each of these is compact and well-based, any maximal contracting filter containing $C$ is generated by a chain.
A few final comments: Notice that I'm only working with compact spaces. The question still makes sense for non-compact spaces, though. I think that, given a space $X$, the answer to our question will be the same for $X$ and for $\beta X$ (the Stone-Cech compactification of $X$). I also think it should be possible to show that every non-compact metric space gives a negative answer to our question.
The class of well-based spaces has a few well-studied generalizations (radial, pseudo-radial, etc.). It could be the case that the property "our question has an affirmative answer for $X$" is equivalent to one of these other properties. I don't really know much about these generalizations, so I can't say, but perhaps it's worth looking into.