Something I have wondered idly about from time to time is:
If $(M,\omega), (M',\omega')$ are symplectic manifolds, and you "know what the Lagrangians $L \subset M$ resp. $L' \subset M'$ are," can you determine whether $M$ and $M'$ are symplectomorphic?
The sort of thing I have in mind is this corresponding statement for coherent sheaves:
Theorem (Gabriel). Suppose $X$ and $Y$ are smooth projective varieties. If there exists an equivalence $\mathrm{\bf Coh}(X) \simeq \mathrm{\bf Coh}(Y)$, then $X$ and $Y$ are isomorphic.
(That's proven in Huybrecht's book on FM transforms using Orlov's theorem and skyscraper sheaves.)
One issue is, what's the right way to formalize "know all $L \subset M$"? (Maybe you mean some version of the Fukaya category up to $A_\infty$-equivalence?) A bigger issue is, how the heck do you prove it?? For certain $M$, there's an analogue of skyscraper sheaves coming from mirror symmetry, but I don't know how to ape the argument beyond that point; for other kinds of $M$, I know how to get some bits of information from the Fukaya category. But it would be awfully nice to have an argument for fairly general $M$, e.g. all compact $M$.