Suppose $A$ is an abelian variety, $X, Y$ are subvarieties of $A$ of complementary dimension,
Does every component of $X \cap Y$ contribute non-negatively to the intersection number?
Suppose $A$ is an abelian variety, $X, Y$ are subvarieties of $A$ of complementary dimension,
Does every component of $X \cap Y$ contribute non-negatively to the intersection number?
The following answer expands on my comment.
We use Fulton's definition of the intersection product. Consider the diagonal embedding $\Delta$ of $A$ in $A \times A$ (which is regular) and intersect this with $X \times Y$. Since $A$ is an abelian variety, the normal bundle $E$ of $\Delta$ is trivial. The normal cone $C$ of $X \times Y \cap \Delta$ is an effective cycle in $E$ and the intersection product is the pullback of this cycle to $\Delta$ via the zero section. Connected components of $C$ map to connected components of $X \cap Y$ and the claim is that each such component gives a non-zero contribution. This follows from the following claim:
Let $Z$ be any variety and $E$ a trivial vector bundle on $Z$. Then the Gysin map (induced by the zero section) from $CH^*(E)$ to $CH^*(Z)$ preserves effective cycles.
This can be seen using Proposition 3.3 in Fulton's book where this Gysin map is expressed as a product followed by a pushforward. In the case $E$ is trivial, the product involved can be seen to be effective since it is given by repeated intersection with divisors in a base point free linear system. Pushforward always preserves effectivity, so the claim follows.
Can't you always find a geometric point $T\in A$ such that the intersection of $X$ and the translation $Y+T$ is either empty or 0-dimensional? Since $X\cdot Y$ is numerically equivalent to $X\cdot(Y+T)$, that should give you the desired non-negativity, as per Damian's comment.