Let $S_{ij}=\sigma _{i}\otimes \sigma _{j}.$ These matrices are unitary and
Hermitian (with eigenvalues $\{-1,-1,1,1\}$, except for $S_{00}=I_{4}$ with unit eigenvalues). They
are orthogonal with respect to the Frobenius inner product $\left\langle
X,Y\right\rangle = \mathrm{tr} (X^{\ast }Y),$ (c.f. this post), which means
that we can premultiply $A$ by $S_{ij}^{\ast }$ and take the trace to find $
c_{ij}=\frac{1}{4}\mathrm{tr}\left( S_{ij}^{\ast }A\right) $, as noted by
Carlo Beenakker. So trivially the eigenvalues of $A$ are related to $c_{00}$
by
$$
c_{00}=\frac{1}{4}\mathrm{tr}\left( I_{4}A\right) =\frac{1}{4}\mathrm{tr}\left(
A\right) =\frac{1}{4}\sum_{i=1}^{4}\lambda _{i}
$$
More interesting is that
$$
\sum_{i=1}^{4}\lambda _{i}^{2}=4\sum_{i=1}^{4}\sigma _{i}^{2}
$$
where $\sigma _{i}$ are the singular values of $C$. To see this, first
note for convenience that since both $S_{ij}$ and $A$ are Hermitian, the $c_{ij}$ are real:
$$
4c_{ij}=\left\langle S_{ij},A\right\rangle =\mathrm{tr}(S_{ij}^{\ast }A)=\mathrm{tr} (S_{ij}A^{\ast })=\mathrm{tr}(A^{\ast }S_{ij})=\left\langle
A,S_{ij}\right\rangle =\overline{\left\langle S_{ij},A\right\rangle }=4
\overline{c_{ij}}
$$
Now consider
$$
\mathrm{tr}\left( A^{\ast }A\right) =\mathrm{tr}\left( A^{\ast
}\sum_{ij}c_{ij}S_{ij}\right) =\mathrm{tr}\left(
\sum_{ij}c_{ij}A^{\ast }S_{ij}\right) =\sum_{ij}c_{ij}%
\mathrm{tr}\left( A^{\ast }S_{ij}\right) =4\sum_{ij}c_{ij}^{2}
$$
The quantity $\mathrm{tr}\left( A^{\ast }A\right) $ is the square of the
Frobenius norm of $A$ and so
$$
\sum_{ij}|a_{ij}|^{2}=\left\Vert A\right\Vert ^{2}=\mathrm{tr}\left(
A^{\ast }A\right) =4\sum_{ij}c_{ij}^{2}
$$
I interpret this result is a Parseval equality. Since $A$ is normal, we have $
\sum_{ij}|a_{ij}|^{2}=\sum_{k}|\lambda _{k}|^{2}$ [H & J,
Thm 2.5.4][1]. For $C$ (non-normal in general), there is a similar
relationship involving singular values, $\sum_{ij}|c_{ij}|^{2}=
\sum_{k}\sigma _{k}{}^{2}$ [H&J, Ch.7, Prob 4][1], and these
relationships combine with the above equation to give the relationship
between the eigenvalues of $A$ and singular values of $C$ given earlier.
In terms of the eigenvalues $\mu_i$ of $C$ we have only an inequality
$$
\sum_{i=1}^{4}\lambda _{i}^{2}\geq 4\sum_{i=1}^{4}|\mu_{i}|^{2}
$$
with equality if and only if $C$ is normal [H&J Ch 5 Prob 26][1].
[1]: R.A.Horn and C.R. Johnson, Matrix Analysis, Cambridge University Press, 1985, pp. 101, 421 and 316.