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Let $M$ be a compact connected 3-manifold and let $S$ be a closed connected surface in $\partial M$. Let $G$ be the image of the map $\pi_1(S) \to \pi_1(M)$ induced by inclusion. I was reading the first chapter of Jaco's "Lectures on 3-Manifolds" and as a corollary to the Loop theorem, he states that $G \cong F \ast G_1 \ast \cdots \ast G_k$ where the $G_i$ are all isomorphic to fundamental groups of closed surfaces.

Let $K$ be the kernel of the map $\pi_1(S) \to \pi_1(M)$ induced by the inclusion. Using the loop theorem to prove that $K$ is normally generated by a finite pairwise disjoint collection of simple closed curves in $\pi_1(S)$. I think that I roughly understand the argument for this - except for the pairwase nonintersection.

If $K = \{1\}$, then we are all set, so assume $K \neq \{ 1 \}$, then by the loop theorem we get an embedding $f_1 : (B^2,\partial B^2) \to (M, S)$ with $[f_1(\partial B^2)] \in K$ and $[f_1(\partial B^2)] \neq 1$. Let $N_1$ be the normal subgroup generated by $[f_1(\partial B^2)]$. If $K \setminus N_1 = \emptyset$ then the claim follows so assume that it is not. Then by applying the loop theorem again, we get an embedding $f_2 : (B^2, \partial B^2) \to (M, S)$ with $[f_2(\partial B^2)] \in K \setminus N_1$. Why is it that we can make $f_1(\partial B^2) \cap f_2(\partial B^2) = \emptyset$?

I also do not understand how, given that we have shown $K$ is normally generated by a set of a pairwise nonintersecting, simple closed curves, how do I see that $G \cong F \ast G_1 \ast \cdots \ast G_k$ as claimed?

I would imagine that we claim that $\pi_1(S)/K \cong \pi_1(S')$ where $S'$ is the space obtained by attaching disks to all of the simple closed curves that normally generate $K$ (from some sort of Seifert-van Kampen argument) and then claim that any space obtained by attaching disks to a such a surface along disjoint simple closed curves is homotopy equivalent to a wedge of circles and surfaces.

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Here's the reference I mentioned at tea today:

MR0732345 (85j:57011)
Bonahon, Francis Cobordism of automorphisms of surfaces. Ann. Sci. École Norm. Sup. (4) 16 (1983), no. 2, 237–270.

See section 2, which shows that given any irreducible manifold $M$, there is a compression body $V\subset M$ which has the property that $M-V$ is incompressible. Moreover $V$ is unique up to isotopy (following from Proposition 2.2 (d)). Hence by the loop theorem the boundary of $M-V$ is $\pi_1$-injective.

For any component $S$ of $\partial M$, $\pi_1 S$ will surject the fundamental group of the component of $V$ in which it lies in the boundary. Moreover, each component has fundamental group given by a product of a free group and some surface groups, as Jaco claims.

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